In Smith waterman algorithm First row and first column of the matrix is filled with ____.

• A) One
• B) ∑
• C) Θ
• D) Zero

Map asMap();

• A) None of the above
• B) Return a map that contains the same attribute as this Annotation
• C) Return a map that contains the same key/values as this Annotation
• D) Return a map that contains the different key/values as this Annotation

The algorithm was developed by Saul B. Needleman and Christian D. Wunsch &published in ________

• A) 1990
• B) 1970
• C) 1980
• D) 1960

PAM stands for

• A) Poly access mutation
• B) Poly accepted mutation
• C) Point accepted mutation
• D) Point access mutation

In dynamic programming, linear gap penalties penalize for each gap the _____.

• A) Different
• B) 2
• C) Same
• D) 0

Biojava is NOT open source.

• A) True
• B) False
• C)
• D)

MATLAB runs on:

• A) Mac
• B) All
• C) Linux
• D) Windows

The ______ step in the algorithm is the trace back for the best alignment.

• A) First
• B) Final
• C) Fourth
• D) Second

Biopython

• A) Matthew Pocock
• B) Steve Searle
• C) Andrew Dalke
• D) Toshiaki Katayama

BioRuby

• A) Andrew Dalke Bioperl
• B) Matthew Pocock
• C) Toshiaki Katayama
• D) Steve Searle

Which one of the following is correct method of Annotation - BioJava?

• A) getannotation;
• B) Annotation();
• C) get.annotation();
• D) getAnnotation();

In dynamic programming, linear gap penalties penalize for each gap the _____

• A) different
• B) 2
• C) same
• D) 0

Assemble language

• A) Add two numbers
• B) Subtract two numbers
• C) Delete two numbers
• D) Multiply two numbers

In biojava, which of the following code use to get the DNA alphabet by name.

• A) dna = AlphabetManager.alphabetForName(DNA);
• B) dna = AlphabetManager.alphabetForName("DNA");
• C) dna = AlphabetManager=alphabetForName("DNA");
• D) dna = Alphabet.Manager.alphabetForName("DNA");

High level languages are

• A) Impossible to learn
• B) Difficult to learn
• C) Easy to learn
• D) Useless to learn

You tell a computer what to do with ________

• A) Software
• B) Program
• C) File
• D) Folder

MATLAB stands for matrix laboratory

• A) True
• B) False
• C)
• D)

You tell a computer what to do with ________.

• A) Software
• B) Program
• C) File
• D) Folder

Which one of the following is an example of Global properties?

• A) Specie Name
• B) Both
• C) None of the above
• D) Sequence

How many Steps are there in dynamic programming?

• A) 4
• B) 3
• C) 5
• D) 2